The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0090
Genome IDDP000238
Search identical group
Phylum/ClassNitrososphaerota
SpeciesCenarchaeum symbiosum [DP000238]
Start position on genome 1717306
End posion on genome 1717220
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
cgtgtatact
tRNA gene sequence 
GCAGAGGTCGCCTAGCCCGGCATGGCGCGGGCCTTGAGAGCCTGTGCGAGCAATCGCACG
GGGGTTCAAATCCCCCTCTCTGCGCCA
Downstream region at tRNA end position 
accagaacta
Secondary structure (Cloverleaf model)
>At0090	Ser	TGA
                   t      GCCA accagaacta
                     G - C
                     C - G
                     A - T
                     G - C
                     A - T
                     G - C
                     G + T          T A
                    T     C C C C C     A
      C G A        C      | | | | |     A
    C       T C C G       G G G G G     C
    C         | | |                 T T
    G       T G G C
      G C A        G     TGCGAGCAATCGCAC
                    C - G
                    G + T
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCAGAGGTCGCCTAGCCCGGCATGGCGCGGGCCTTGAGAGCCTGTGCGAGCAATCGCACG
GGGGTTCAAATCCCCCTCTCTGCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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