The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0091
Genome IDDP000238
Search identical group
Phylum/ClassNitrososphaerota
SpeciesCenarchaeum symbiosum [DP000238]
Start position on genome 1751265
End posion on genome 1751192
Amino Acid Gly
Anticodon TCC
Upstream region at tRNA start position 
gcaccctgtt
tRNA gene sequence 
GCAGTCATAGTATAGCTTGGTCAGTATACGGGGTTTCCAACCCTGCGACGCGGGTTCAAA
TCCCGCTGACTGCAtct
Downstream region at tRNA end position 
aatgacgggg
Secondary structure (Cloverleaf model)
>At0091	Gly	TCC
                   t      Atct aatgacgggg
                     G - C
                     C - G
                     A - T
                     G - C
                     T - A
                     C - G
                     A - T          T A
                    T     C G C C C     A
    T C G A        A      | | | | |     A
  T         T A T G       G C G G G     C
  G         + | | +                 T T
  G         G T A T
    T C A          A     CGAC
                    C - G
                    G + T
                    G - C
                    G - C
                    G - C
                  T       A
                  T       A
                    T C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCAGTCATAGTATAGCTTGGTCAGTATACGGGGTTTCCAACCCTGCGACGCGGGTTCAAA
TCCCGCTGACTGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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