The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0092
Genome IDDP000238
Search identical group
Phylum/ClassNitrososphaerota
SpeciesCenarchaeum symbiosum [DP000238]
Start position on genome 1898649
End posion on genome 1898576
Amino Acid Gly
Anticodon CCC
Upstream region at tRNA start position 
cggatcgcga
tRNA gene sequence 
GCGGAGTTAGTCCAGCCCGGTAGGACGTCAGCTTCCCAAGCTGAAGGTCGCGTGTTCAAA
TCCCGCACTCCGCActg
Downstream region at tRNA end position 
ctacatccca
Secondary structure (Cloverleaf model)
>At0092	Gly	CCC
                   a      Actg ctacatccca
                     G - C
                     C - G
                     G - C
                     G - C
                     A - T
                     G - C
                     T - A          T A
                    T     C G C C C     A
      C G A        A      | | |   |     A
    C       C C T G       G C G T G     C
    C       | | | |                 T T
    G       G G A C
      G T A        G     AGGTC
                    T - A
                    C - G
                    A - T
                    G - C
                    C - G
                  T       A
                  T       A
                    C C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGAGTTAGTCCAGCCCGGTAGGACGTCAGCTTCCCAAGCTGAAGGTCGCGTGTTCAAA
TCCCGCACTCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK