The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0094
Genome IDDP000238
Search identical group
Phylum/ClassNitrososphaerota
SpeciesCenarchaeum symbiosum [DP000238]
Start position on genome 1949406
End posion on genome 1949332
Amino Acid Arg
Anticodon TCG
Upstream region at tRNA start position 
tggttgaaac
tRNA gene sequence 
GGACTCGTTGCACAGCCTGGACAGTGCGGGCGGCTTCGGACCGCCAGGTCGAGGGATCGA
AGCCCTCCGAGCCCTtgc
Downstream region at tRNA end position 
agttctagtg
Secondary structure (Cloverleaf model)
>At0094	Arg	TCG
                   c      Ttgc agttctagtg
                     G - C
                     G - C
                     A   C
                     C - G
                     T - A
                     C - G
                     G - C          G A
                    T     C T C C C     A
    C C G A        T      | | | | |     G
  T         C A C G       G A G G G     C
  G         | | | |                 A T
  G         G T G C
    A C A          G     AGGTC
                    G - C
                    G - C
                    C - G
                    G - C
                    G - C
                  C       A
                  T       G
                    T C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGACTCGTTGCACAGCCTGGACAGTGCGGGCGGCTTCGGACCGCCAGGTCGAGGGATCGA
AGCCCTCCGAGCCCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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