The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0096
Genome IDCP000493
Search identical group
Phylum/ClassThermoproteota
SpeciesHyperthermus butylicus DSM 5456 [CP000493]
Start position on genome 2781
End posion on genome 2856
Amino Acid His
Anticodon GTG
Upstream region at tRNA start position 
ccagtgggag
tRNA gene sequence 
GCCGCCGTAGCTCAGCCGGGAGAGCGCGGGGCTGTGGACCCCGAGGTCCCGGGTTCAAAT
CCCGGCGGCGGCCCCA
Downstream region at tRNA end position 
ctccatcctc
Secondary structure (Cloverleaf model)
>At0096	His	GTG
                   g      CCCA ctccatcctc
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     A
    C       C T C G       C C G G G     C
    G       | | | |                 T T
    G       G A G C
      G A          G     AGGTC
                    C - G
                    G - C
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G
                    G T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCGTAGCTCAGCCGGGAGAGCGCGGGGCTGTGGACCCCGAGGTCCCGGGTTCAAAT
CCCGGCGGCGGCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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