The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0098
Genome IDCP000493
Search identical group
Phylum/ClassThermoproteota
SpeciesHyperthermus butylicus DSM 5456 [CP000493]
Start position on genome 360308
End posion on genome 360385
Amino Acid Val
Anticodon TAC
Upstream region at tRNA start position 
gaaaagggct
tRNA gene sequence 
GGGCCCGTCGTCTAGCCTGGTTAGGACGCCGCCCTTACACGGCGGAGGTCCGGGGTTCAA
ATCCCCGCGGGCCCACCA
Downstream region at tRNA end position 
tgtacaacat
Secondary structure (Cloverleaf model)
>At0098	Val	TAC
                   t      ACCA tgtacaacat
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G C C C C     A
    C C G A        C      | | | | |     A
  T         T C T G       C G G G G     C
  G         + | | |                 T T
  G         G G A C
    T T A          G     AGGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  C       C
                  T       A
                    T A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTCGTCTAGCCTGGTTAGGACGCCGCCCTTACACGGCGGAGGTCCGGGGTTCAA
ATCCCCGCGGGCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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