The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0101
Genome IDCP000493
Search identical group
Phylum/ClassThermoproteota
SpeciesHyperthermus butylicus DSM 5456 [CP000493]
Start position on genome 444135
End posion on genome 444211
Amino Acid Thr
Anticodon GGT
Upstream region at tRNA start position 
tacactggaa
tRNA gene sequence 
GCCGCCGTAGCTCAGCCTGGCGGAGCGCCGCCCTGGTAAGGCGGAGGTCCCGGGTTCAAA
TCCCGGCGGCGGCTCCA
Downstream region at tRNA end position 
cctgcgggcc
Secondary structure (Cloverleaf model)
>At0101	Thr	GGT
                   a      TCCA cctgcgggcc
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     A
    C       C T C G       C C G G G     C
    T       | | | |                 T T
    G       G A G C
      G C G        G     AGGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  C       A
                  T       A
                    G G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCGTAGCTCAGCCTGGCGGAGCGCCGCCCTGGTAAGGCGGAGGTCCCGGGTTCAAA
TCCCGGCGGCGGCTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK