The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0102
Genome IDCP000493
Search identical group
Phylum/ClassThermoproteota
SpeciesHyperthermus butylicus DSM 5456 [CP000493]
Start position on genome 452831
End posion on genome 452943
Amino Acid Pro
Anticodon CGG
Upstream region at tRNA start position
tggatgaggt
tRNA gene sequence
GGGCCCGTCGTCTAGCTTGGTAGGATGCGGGGTTCGGGACCCCGTGGTCCCGGGTTCAAA
TCCCGGCGGGCCCACCA
Downstream region at tRNA end position
ctactcaacc
Secondary structure (Cloverleaf model)
>At0102	Pro	CGG
                   t      ACCA ctactcaacc
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
      C G A        C      | | | | |     A
    T       T C T G       C C G G G     C
    T       + | | +                 T T
    G       G G A T
      G T A        G     TGGTC
                    C - G
                    G - C
                    G - C
                    G - C
                    G - C
                  T*      A
                  T       G
                    C G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTCGTCTAGCTTGGTAGGATGCGGGGTacacagctcccgccagggcgcggggct
gtgcccgacTCGGGACCCCGTGGTCCCGGGTTCAAATCCCGGCGGGCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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