The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0103
Genome IDCP000493
Search identical group
Phylum/ClassThermoproteota
SpeciesHyperthermus butylicus DSM 5456 [CP000493]
Start position on genome 455560
End posion on genome 455647
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
catggcaggt
tRNA gene sequence 
GCCGGGGTCGCCTAGCCTGGTAGGGCGCCGGCCTGCTAAGCCGGTGGGGGTCCACCCCGC
GCGGGTTCAAATCCCGCCCCCGGCGCCA
Downstream region at tRNA end position 
cacctcctaa
Secondary structure (Cloverleaf model)
>At0103	Ser	GCT
                   t      GCCA cacctcctaa
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
      C G A        C      | | | | |     A
    C       T C C G       G C G G G     C
    T       + | | |                 T T
    G       G G G C
      G T A        G     TGGGGGTCCACCCCGC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    G C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTCGCCTAGCCTGGTAGGGCGCCGGCCTGCTAAGCCGGTGGGGGTCCACCCCGC
GCGGGTTCAAATCCCGCCCCCGGCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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