The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0109
Genome IDCP000493
Search identical group
Phylum/ClassThermoproteota
SpeciesHyperthermus butylicus DSM 5456 [CP000493]
Start position on genome 1143028
End posion on genome 1143103
Amino Acid Asn
Anticodon GTT
Upstream region at tRNA start position 
cggtgcagat
tRNA gene sequence 
GCCGCCGTAGCTCAGCGGGTAGAGCGCCGGGCTGTTAACCCGGTGGTCGGTGGTTCGAAT
CCACCCGGCGGCGCCA
Downstream region at tRNA end position 
caatcccttc
Secondary structure (Cloverleaf model)
>At0109	Asn	GTT
                   t      GCCA caatcccttc
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     C C A C C     A
      C G A        A      | | | | |     G
    G       C T C G       G G T G G     C
    G       | | | |                 T T
    G       G A G C
      T A          G     TGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A
                    G T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCGTAGCTCAGCGGGTAGAGCGCCGGGCTGTTAACCCGGTGGTCGGTGGTTCGAAT
CCACCCGGCGGCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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