The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0111
Genome IDCP000493
Search identical group
Phylum/ClassThermoproteota
SpeciesHyperthermus butylicus DSM 5456 [CP000493]
Start position on genome 1144457
End posion on genome 1144588
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
tgaatagggt
tRNA gene sequence 
GGGCCCGTAGCTCAGCCAGGCAGAGCGCCGGGCTCCAGACCCGGAGGTCGGGGGTTCAAA
TCCCCCCGGGCCCACCA
Downstream region at tRNA end position 
cgcaccccta
Secondary structure (Cloverleaf model)
>At0111	Trp	CCA
                   t      ACCA cgcaccccta
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C C C C C     A
      C G A        A      | | | | |     A
    C       C T C G       G G G G G     C
    A       | | | |                 T T
    G       G A G C
      G C A        G     AGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G *
                    C C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCTCAGCCAGGCAGAGCGCCGGGCTCCAGaccggcacctccggtccaggcg
ccgggtctgtcgaaaacgggatgagagggagagACCCGGAGGTCGGGGGTTCAAATCCCC
CCGGGCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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