The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0112
Genome IDCP000493
Search identical group
Phylum/ClassThermoproteota
SpeciesHyperthermus butylicus DSM 5456 [CP000493]
Start position on genome 1171412
End posion on genome 1171523
Amino Acid Pro
Anticodon GGG
Upstream region at tRNA start position
acggccagac
tRNA gene sequence
GGGGCCGTCGTCTAGCCTGGCAGGATGCCAGCCTGGGGCGCTGGTGGTCCCGGGTTCAAA
TCCCGGCGGCCCCACCA
Downstream region at tRNA end position
ttacttctcc
Secondary structure (Cloverleaf model)
>At0112	Pro	GGG
                   c      ACCA ttacttctcc
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
      C G A        C      | | | | |     A
    C       T C T G       C C G G G     C
    T       + | | +                 T T
    G       G G A T
      G C A        G     TGGTC
                    C - G
                    C - G
                    A - T
                    G - C
                    C - G
                  C       C
                  T       G *
                    G G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCCGTCGTCTAGCCTGGCAGGATGCCAGCCTGGGGacgcaccccgccgcccgaaagg
gcgggcgccagagCGCTGGTGGTCCCGGGTTCAAATCCCGGCGGCCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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