The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0114
Genome IDCP000493
Search identical group
Phylum/ClassThermoproteota
SpeciesHyperthermus butylicus DSM 5456 [CP000493]
Start position on genome 1326254
End posion on genome 1326341
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
ccccctgggc
tRNA gene sequence 
GCCGGGGTGCCCGAGCGGTCCAAGGGGCCGGCCTTGAGAGCCGGTGGCCGACAAGGCCGC
GCGGGTTCAAATCCCGCCCCCGGCGCCA
Downstream region at tRNA end position 
taccgcctct
Secondary structure (Cloverleaf model)
>At0114	Ser	TGA
                   c      GCCA taccgcctct
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
      C G A        G      | | | | |     A
    G       G C C C       G C G G G     C
    G         | | |                 T T
    T       A G G G
      C C A        G     TGGCCGACAAGGCCGC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTGCCCGAGCGGTCCAAGGGGCCGGCCTTGAGAGCCGGTGGCCGACAAGGCCGC
GCGGGTTCAAATCCCGCCCCCGGCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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