The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0117
Genome IDCP000493
Search identical group
Phylum/ClassThermoproteota
SpeciesHyperthermus butylicus DSM 5456 [CP000493]
Start position on genome 1617396
End posion on genome 1617471
Amino Acid Gln
Anticodon CTG
Upstream region at tRNA start position 
catggcgggt
tRNA gene sequence 
AGCCGGGTCGTCTAGCGGCCAAGGATGCGGGGCTCTGGCCCCCGTGACCGGGGTTCGAAT
CCCCGCCCGGCTACCA
Downstream region at tRNA end position 
ttcctttcat
Secondary structure (Cloverleaf model)
>At0117	Gln	CTG
                   t      ACCA ttcctttcat
                     A - T
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C          T A
                    T     G C C C C     A
      C G A        C      | | | | |     G
    G       T C T G       C G G G G     C
    G       + | | +                 T T
    C       G G A T
      C A A        G     TGAC
                    C - G
                    G - C
                    G - C
                    G - C
                    G - C
                  C       C
                  T       G
                    C T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
AGCCGGGTCGTCTAGCGGCCAAGGATGCGGGGCTCTGGCCCCCGTGACCGGGGTTCGAAT
CCCCGCCCGGCTACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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