The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0118
Genome IDCP000493
Search identical group
Phylum/ClassThermoproteota
SpeciesHyperthermus butylicus DSM 5456 [CP000493]
Start position on genome 1619263
End posion on genome 1619339
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position 
acacgctggt
tRNA gene sequence 
GGGGCCGTCGTCTAGCTTGGCAGGATGCGGGGCTTGGGCCCCCGTGGTCCGGGGTTCAAA
TCCCCGCGGCCCCACCA
Downstream region at tRNA end position 
ctaaaccctt
Secondary structure (Cloverleaf model)
>At0118	Pro	TGG
                   t      ACCA ctaaaccctt
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G C C C C     A
      C G A        C      | | | | |     A
    T       T C T G       C G G G G     C
    T       + | | +                 T T
    G       G G A T
      G C A        G     TGGTC
                    C - G
                    G - C
                    G - C
                    G - C
                    G - C
                  C       C
                  T       G
                    T G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCCGTCGTCTAGCTTGGCAGGATGCGGGGCTTGGGCCCCCGTGGTCCGGGGTTCAAA
TCCCCGCGGCCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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