The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0124
Genome IDCP000493
Search identical group
Phylum/ClassThermoproteota
SpeciesHyperthermus butylicus DSM 5456 [CP000493]
Start position on genome 77698
End posion on genome 77597
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
acggatgggc
tRNA gene sequence 
GCCGGGGTGGCCGAGCGGTCAAAGGCGGCGGGCTGCAGACCCGTTGATCCCGGGTTCAAA
TCCCGGCCCCGGCTCCA
Downstream region at tRNA end position 
acctctccct
Secondary structure (Cloverleaf model)
>At0124	Cys	GCA
                   c      TCCA acctctccct
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G G C C C     A
      C G A        G      | | | | |     A
    G       G C C G       C C G G G     C
    G         | | |                 T T
    T       A G G C
      C A A        G     TGATC
                    G + T
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G *
                    G C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTGGCCGAGCGGTCAAAGGCGGCGGGCTGCAGtgcctagcacccgcccatcgtg
gaaACCCGTTGATCCCGGGTTCAAATCCCGGCCCCGGCTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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