The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0127
Genome IDCP000493
Search identical group
Phylum/ClassThermoproteota
SpeciesHyperthermus butylicus DSM 5456 [CP000493]
Start position on genome 130216
End posion on genome 130139
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position
tgcgcggcgt
tRNA gene sequence
GCCGCGGTAGTATAGCCCGGCCAAGTATGCGGGCCTTTCAAGCCCGTGACCCGGGTTCAA
ATCCCGGCCGCGGCACCA
Downstream region at tRNA end position
actcctctaa
Secondary structure (Cloverleaf model)
>At0127	Glu	TTC
                   t      ACCA actcctctaa
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  C         T A T G       C C G G G     C
  G         + | | +                 T T
  G         G T A T
    C C A A        G     TGAC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    T T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCGGTAGTATAGCCCGGCCAAGTATGCGGGCCTTTCAAGCCCGTGACCCGGGTTCAA
ATCCCGGCCGCGGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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