The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0129
Genome IDCP000493
Search identical group
Phylum/ClassThermoproteota
SpeciesHyperthermus butylicus DSM 5456 [CP000493]
Start position on genome 376263
End posion on genome 376186
Amino Acid Gly
Anticodon CCC
Upstream region at tRNA start position 
ccaggtggct
tRNA gene sequence 
GCGGCGGTCGTCTAGCCTGGACTAGGACGCCGGCCCCCCAAGCCGGTCACCCGGGTTCAA
ATCCCGGCCGCCGCACCA
Downstream region at tRNA end position 
caatctacct
Secondary structure (Cloverleaf model)
>At0129	Gly	CCC
                   t      ACCA caatctacct
                     G - C
                     C - G
                     G - C
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        C      | | | | |     A
  T         T C T G       C C G G G     C
  G         + | | |                 T T
  G         G G A C
    A C T A        G     TCAC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  C       A
                    C C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGCGGTCGTCTAGCCTGGACTAGGACGCCGGCCCCCCAAGCCGGTCACCCGGGTTCAA
ATCCCGGCCGCCGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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