The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0130
Genome IDCP000493
Search identical group
Phylum/ClassThermoproteota
SpeciesHyperthermus butylicus DSM 5456 [CP000493]
Start position on genome 447553
End posion on genome 447388
Amino Acid Tyr
Anticodon GTA
Upstream region at tRNA start position 
accgctggat
tRNA gene sequence 
CCCGCCGTAGCTCAGCGGCAGAGCGCCCGGCTGTAGACCGGGCGGTCCGGGGTTCGAATC
CCCGCGGCGGGACCA
Downstream region at tRNA end position 
ccctcccccg
Secondary structure (Cloverleaf model)
>At0130	Tyr	GTA
                   t      ACCA ccctcccccg
                     C - G
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G C C C C     A
        G A        A      | | | | |     G
      C     C T C G       C G G G G     C
      G     | | | |                 T T
      G     G A G C
        C A        G     CGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       G *
                    G T A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
CCCGCCGTAGCTCAGCGGCAGAGCGCCCGGCTGTAGgtggggcgggtaggccccccgcgc
gcccgacaaccccgcaatggggagcggatgagggcgcgtcggcatagcagcgggggccgc
agcagaaACCGGGCGGTCCGGGGTTCGAATCCCCGCGGCGGGACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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