The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0134
Genome IDCP000493
Search identical group
Phylum/ClassThermoproteota
SpeciesHyperthermus butylicus DSM 5456 [CP000493]
Start position on genome 1024095
End posion on genome 1024018
Amino Acid Arg
Anticodon CCT
Upstream region at tRNA start position 
gagcctggct
tRNA gene sequence 
GGGCCCGTAGCTCAGCCAGGATAGAGCGCCGGCCTCCTAAGCCGGTGGTCGGGGGTTCAA
ATCCCCCCGGGCCCGCCA
Downstream region at tRNA end position 
acaactcgac
Secondary structure (Cloverleaf model)
>At0134	Arg	CCT
                   t      GCCA acaactcgac
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C C C C C     A
    C C G A        A      | | | | |     A
  A         C T C G       G G G G G     C
  G         | | | |                 T T
  G         G A G C
    A T A          G     TGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    C C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCTCAGCCAGGATAGAGCGCCGGCCTCCTAAGCCGGTGGTCGGGGGTTCAA
ATCCCCCCGGGCCCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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