The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0136
Genome IDCP000493
Search identical group
Phylum/ClassThermoproteota
SpeciesHyperthermus butylicus DSM 5456 [CP000493]
Start position on genome 1131276
End posion on genome 1131170
Amino Acid Thr
Anticodon CGT
Upstream region at tRNA start position 
caaaacatgt
tRNA gene sequence 
GCCGCCGTAGCTCAGCTGGCAGAGCACCGGCCTCGTAAGCCGGGGGTCCCGGGTTCAAAT
CCCGGCGGCGGCTCCA
Downstream region at tRNA end position 
taattctgcg
Secondary structure (Cloverleaf model)
>At0136	Thr	CGT
                   t      TCCA taattctgcg
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     A
    T       C T C G       C C G G G     C
    G       | | | |                 T T
    G       G A G C
      C A          A     GGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A *
                    C G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCGTAGCTCAGCTGGCAGAGCACCGGCCTCGTAagcccgcctggtgtcccgcgggt
tccgagggAGCCGGGGGTCCCGGGTTCAAATCCCGGCGGCGGCTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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