The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0137
Genome IDCP000493
Search identical group
Phylum/ClassThermoproteota
SpeciesHyperthermus butylicus DSM 5456 [CP000493]
Start position on genome 1187274
End posion on genome 1187197
Amino Acid Arg
Anticodon TCG
Upstream region at tRNA start position 
caggatttgt
tRNA gene sequence 
GGGCCCGTAGCCTAGCCAGGATAGGGCGCCGGCCTTCGGAGCCGGAGGTCCGGGGTTCAA
ATCCCCGCGGGCCCGCCA
Downstream region at tRNA end position 
ttcgagacat
Secondary structure (Cloverleaf model)
>At0137	Arg	TCG
                   t      GCCA ttcgagacat
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G C C C C     A
    C C G A        A      | | | | |     A
  A         T C C G       C G G G G     C
  G         + | | |                 T T
  G         G G G C
    A T A          G     AGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCCTAGCCAGGATAGGGCGCCGGCCTTCGGAGCCGGAGGTCCGGGGTTCAA
ATCCCCGCGGGCCCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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