The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0138
Genome IDCP000493
Search identical group
Phylum/ClassThermoproteota
SpeciesHyperthermus butylicus DSM 5456 [CP000493]
Start position on genome 1277540
End posion on genome 1277463
Amino Acid Arg
Anticodon GCG
Upstream region at tRNA start position
accatgggct
tRNA gene sequence
GGGCCCGTAGTCTAGCCAGGATAGGACGCCGGCCTGCGGAGCCGGTAGTCCGGGGTTCAA
ATCCCCGCGGGCCCGCCA
Downstream region at tRNA end position
tcccacacta
Secondary structure (Cloverleaf model)
>At0138	Arg	GCG
                   t      GCCA tcccacacta
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G C C C C     A
    C C G A        A      | | | | |     A
  A         T C T G       C G G G G     C
  G         + | | |                 T T
  G         G G A C
    A T A          G     TAGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    G C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGTCTAGCCAGGATAGGACGCCGGCCTGCGGAGCCGGTAGTCCGGGGTTCAA
ATCCCCGCGGGCCCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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