The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0139
Genome IDCP000493
Search identical group
Phylum/ClassThermoproteota
SpeciesHyperthermus butylicus DSM 5456 [CP000493]
Start position on genome 1343694
End posion on genome 1343607
Amino Acid Leu
Anticodon CAA
Upstream region at tRNA start position 
ctacatggct
tRNA gene sequence 
GCGGGGGTGCCCGAGCCAGGTCGAAGGGGGCGGGCTCAAGACCCGCTGGCGTAGGCCGGC
GTGGGTTCAAATCCCACCCCCCGCACCA
Downstream region at tRNA end position 
ccccctcctt
Secondary structure (Cloverleaf model)
>At0139	Leu	CAA
                   t      ACCA ccccctcctt
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C A C C C     A
    C C G A        G      | | | | |     A
  A         G C C C       G T G G G     C
  G           | | |                 T T
  G         A G G G
    T C G A        G     TGGCGTAGGCCGGC
                    G - C
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G
                    C A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTGCCCGAGCCAGGTCGAAGGGGGCGGGCTCAAGACCCGCTGGCGTAGGCCGGC
GTGGGTTCAAATCCCACCCCCCGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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