The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0141
Genome IDCP000493
Search identical group
Phylum/ClassThermoproteota
SpeciesHyperthermus butylicus DSM 5456 [CP000493]
Start position on genome 1600133
End posion on genome 1600056
Amino Acid Glu
Anticodon CTC
Upstream region at tRNA start position 
ccctctggct
tRNA gene sequence 
GCCGCGGTAGTATAGCCCGGCCAAGTATGCGGGCCTCTCGAGCCCGTGACCCGGGTTCAA
ATCCCGGCCGCGGCACCA
Downstream region at tRNA end position 
aatccacatc
Secondary structure (Cloverleaf model)
>At0141	Glu	CTC
                   t      ACCA aatccacatc
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  C         T A T G       C C G G G     C
  G         + | | +                 T T
  G         G T A T
    C C A A        G     TGAC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    C T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCGGTAGTATAGCCCGGCCAAGTATGCGGGCCTCTCGAGCCCGTGACCCGGGTTCAA
ATCCCGGCCGCGGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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