The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0145
Genome IDCP000682
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera sedula DSM 5348 [CP000682]
Start position on genome 53455
End posion on genome 53550
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
atagttaagt
tRNA gene sequence 
GCCGGGGTGCCCGAGCGGACCAAGGGGCTGGCCTTGAGAGCCAGTAGGGAACTCCCTGCG
CGGGTTCAAATCCCGCCCCCGGCGtct
Downstream region at tRNA end position 
ggaatccttt
Secondary structure (Cloverleaf model)
>At0145	Ser	TGA
                   t      Gtct ggaatccttt
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
      C G A        G      | | | | |     A
    G       G C C C       G C G G G     C
    G         | | |                 T T
    A       A G G G
      C C A        G     TAGGGAACTCCCTGC
                    C - G
                    T - A
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G *
                    T G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTGCCCGAGCGGACCAAGGGGCTGGCCTTGAGagcttcctggttAGCCAGTAGG
GAACTCCCTGCGCGGGTTCAAATCCCGCCCCCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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