The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0146
Genome IDCP000682
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera sedula DSM 5348 [CP000682]
Start position on genome 54195
End posion on genome 54267
Amino Acid Gln
Anticodon TTG
Upstream region at tRNA start position 
attcctaatt
tRNA gene sequence 
AGCCGGGTAGTCTAGCGGCCAAGGATCCAGGGCTTTGGCCCCTGGGACCAGGGTTCGAAT
CCCTGCCCGGCTAcct
Downstream region at tRNA end position 
cctcgtgatt
Secondary structure (Cloverleaf model)
>At0146	Gln	TTG
                   t      Acct cctcgtgatt
                     A - T
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C          T A
                    T     G T C C C     A
      C G A        A      | | | | |     G
    G       T C T G       C A G G G     C
    G       + | | +                 T T
    C       G G A T
      C A A        C     GGAC
                    C - G
                    A - T
                    G - C
                    G - C
                    G - C
                  C       C
                  T       G
                    T T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
AGCCGGGTAGTCTAGCGGCCAAGGATCCAGGGCTTTGGCCCCTGGGACCAGGGTTCGAAT
CCCTGCCCGGCTA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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