The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0147
Genome IDCP000682
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera sedula DSM 5348 [CP000682]
Start position on genome 141492
End posion on genome 141583
Amino Acid Lys
Anticodon CTT
Upstream region at tRNA start position 
gctttaccct
tRNA gene sequence 
GGGCTCGTAGCTTAGCCAGGTAGAGCGACGGGCTCTTAACCCGTAGGTCCCGGGTTCGAA
TCCCGGCGAGCCCGCCA
Downstream region at tRNA end position 
cacttatagt
Secondary structure (Cloverleaf model)
>At0147	Lys	CTT
                   t      GCCA cacttatagt
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     C - G
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     G
    C       T T C G       C C G G G     C
    A       + | | |                 T T
    G       G A G C
      G T A        G     AGGTC
                    A - T
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A *
                    C T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTCGTAGCTTAGCCAGGTAGAGCGACGGGCTCTTAaccacaacgggaggtACCCGTA
GGTCCCGGGTTCGAATCCCGGCGAGCCCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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