The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0149
Genome IDCP000682
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera sedula DSM 5348 [CP000682]
Start position on genome 195938
End posion on genome 196012
Amino Acid Val
Anticodon CAC
Upstream region at tRNA start position 
agtgtgctga
tRNA gene sequence 
GGACCCGTCGTCTAGCCTGGTTAGGACGCAGCCCTCACACGGCTGAGGTCGAGGGTTCAA
ATCCCTCCGGGTCCAtct
Downstream region at tRNA end position 
ttttacgata
Secondary structure (Cloverleaf model)
>At0149	Val	CAC
                   a      Atct ttttacgata
                     G - C
                     G - C
                     A - T
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C T C C C     A
    C C G A        C      | | | | |     A
  T         T C T G       G A G G G     C
  G         + | | |                 T T
  G         G G A C
    T T A          G     AGGTC
                    C - G
                    A - T
                    G - C
                    C - G
                    C - G
                  C       C
                  T       A
                    C A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGACCCGTCGTCTAGCCTGGTTAGGACGCAGCCCTCACACGGCTGAGGTCGAGGGTTCAA
ATCCCTCCGGGTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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