The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0151
Genome IDCP000682
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera sedula DSM 5348 [CP000682]
Start position on genome 773416
End posion on genome 773505
Amino Acid Glu
Anticodon CTC
Upstream region at tRNA start position 
tattaattat
tRNA gene sequence 
GCCGCGATAGTATAGCCCGGTCAAGTATGCAGGCCTCTCAAGCCTGTGGCCCGGGTTCAA
ATCCCGGTCGCGGCActc
Downstream region at tRNA end position 
cttttagacc
Secondary structure (Cloverleaf model)
>At0151	Glu	CTC
                   t      Actc cttttagacc
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     G - C
                     A - T          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  C         T A T G       C C G G G     C
  G         + | | +                 T T
  G         G T A T
    T C A A        G     TGGC
                    C - G
                    A - T
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    C T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCGATAGTATAGCCCGGTCAagccgtggtgccgagAGTATGCAGGCCTCTCAAGCCT
GTGGCCCGGGTTCAAATCCCGGTCGCGGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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