The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0152
Genome IDCP000682
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera sedula DSM 5348 [CP000682]
Start position on genome 1535617
End posion on genome 1535703
Amino Acid Thr
Anticodon GGT
Upstream region at tRNA start position 
acttatctgt
tRNA gene sequence 
GCCGCGGTAGCTCAGCCTGGCTGGAGCGCTGCCCTGGTAAGGCAGAGGCCCCGGGTTCAA
ATCCCGGCCGCGGCTcct
Downstream region at tRNA end position 
cacatataag
Secondary structure (Cloverleaf model)
>At0152	Thr	GGT
                   t      Tcct cacatataag
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  T         C T C G       C C G G G     C
  G         | | | |                 T T
  G         G A G C
    C T G          G     AGGCC
                    C - G
                    T - A
                    G - C
                    C - G
                    C - G
                  C       A
                  T       A *
                    G G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCGGTAGCTCAGCCTGGCTGGAGCGCTGCCCTGGTAaccaacccgggcAGGCAGAGG
CCCCGGGTTCAAATCCCGGCCGCGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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