The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0155
Genome IDCP000682
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera sedula DSM 5348 [CP000682]
Start position on genome 1596828
End posion on genome 1596900
Amino Acid Gln
Anticodon CTG
Upstream region at tRNA start position 
tactttaatt
tRNA gene sequence 
AGCCGGGTAGTCTAGCGGCCAAGGATCCAGGGCTCTGGCCCCTGGGACCCCGGTTCGAAT
CCGGGCCCGGCTAcct
Downstream region at tRNA end position 
tctttgagac
Secondary structure (Cloverleaf model)
>At0155	Gln	CTG
                   t      Acct tctttgagac
                     A - T
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C          T A
                    T     G G G C C     A
      C G A        A      | | | | |     G
    G       T C T G       C C C G G     C
    G       + | | +                 T T
    C       G G A T
      C A A        C     GGAC
                    C - G
                    A - T
                    G - C
                    G - C
                    G - C
                  C       C
                  T       G
                    C T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
AGCCGGGTAGTCTAGCGGCCAAGGATCCAGGGCTCTGGCCCCTGGGACCCCGGTTCGAAT
CCGGGCCCGGCTA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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