The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0157
Genome IDCP000682
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera sedula DSM 5348 [CP000682]
Start position on genome 1598625
End posion on genome 1598713
Amino Acid Thr
Anticodon TGT
Upstream region at tRNA start position 
gttataacgt
tRNA gene sequence 
GCCGCTGTAGCTCAGCCTGGCCAGAGCGCCGGCCTTGTAAGCCGGCGGTCGCGGGTTCAA
ATCCCGCCAGCGGCTtct
Downstream region at tRNA end position 
agatacttcc
Secondary structure (Cloverleaf model)
>At0157	Thr	TGT
                   t      Ttct agatacttcc
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     T - A
                     G - C          T A
                    T     C G C C C     A
    C C G A        A      | | | | |     A
  T         C T C G       G C G G G     C
  G         | | | |                 T T
  G         G A G C
    C C A          G     CGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A *
                    T G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCTGTAGCTCAGCCTGGCCAGAGCGCCGGCCTTGTAaggtttcccaagccAGCCGGC
GGTCGCGGGTTCAAATCCCGCCAGCGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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