The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0159
Genome IDCP000682
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera sedula DSM 5348 [CP000682]
Start position on genome 1830495
End posion on genome 1830572
Amino Acid Gly
Anticodon TCC
Upstream region at tRNA start position 
caatccatgt
tRNA gene sequence 
GCGGCCGTAGTCTAGCCTGGTTAGGACGCTGGCCTTCCAAGCCAGAAGTCCCGGGTTCAA
ATCCCGGCGGTCGCACCA
Downstream region at tRNA end position 
ttcaggatcc
Secondary structure (Cloverleaf model)
>At0159	Gly	TCC
                   t      ACCA ttcaggatcc
                     G - C
                     C - G
                     G - C
                     G + T
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  T         T C T G       C C G G G     C
  G         + | | |                 T T
  G         G G A C
    T T A          G     AAGTC
                    C - G
                    T - A
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    T C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGCCGTAGTCTAGCCTGGTTAGGACGCTGGCCTTCCAAGCCAGAAGTCCCGGGTTCAA
ATCCCGGCGGTCGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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