The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0160
Genome IDCP000682
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera sedula DSM 5348 [CP000682]
Start position on genome 1853340
End posion on genome 1853414
Amino Acid Arg
Anticodon GCG
Upstream region at tRNA start position 
attaggaatt
tRNA gene sequence 
GGACCCGTGGCTCAGCCAGGACAGAGCGAAGGCCTGCGGAGCCTTAGGTCCCGGGTTCAA
ATCCCGGCGGGTCCGcct
Downstream region at tRNA end position 
attccgtagc
Secondary structure (Cloverleaf model)
>At0160	Arg	GCG
                   t      Gcct attccgtagc
                     G - C
                     G - C
                     A - T
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        G      | | | | |     A
  A         C T C G       C C G G G     C
  G         | | | |                 T T
  G         G A G C
    A C A          G     AGGTC
                    A - T
                    A - T
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    G C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGACCCGTGGCTCAGCCAGGACAGAGCGAAGGCCTGCGGAGCCTTAGGTCCCGGGTTCAA
ATCCCGGCGGGTCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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