The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0162
Genome IDCP000682
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera sedula DSM 5348 [CP000682]
Start position on genome 2096337
End posion on genome 2096425
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
tattttcatt
tRNA gene sequence 
GCCGCGGTAGTATAGCCCGGCCAAGTATGCGGGCCTTTCGAGCCCGTGACCCGGGTTCAA
ATCCCGGCCGCGGCActa
Downstream region at tRNA end position 
attttacgtc
Secondary structure (Cloverleaf model)
>At0162	Glu	TTC
                   t      Acta attttacgtc
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  C         T A T G       C C G G G     C
  G         + | | +                 T T
  G         G T A T
    C C A A        G     TGAC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCGGTAGTATAGCCCGGCCAtgctctgcgccgagAGTATGCGGGCCTTTCGAGCCCG
TGACCCGGGTTCAAATCCCGGCCGCGGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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