The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0163
Genome IDCP000682
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera sedula DSM 5348 [CP000682]
Start position on genome 2152523
End posion on genome 2152611
Amino Acid Tyr
Anticodon GTA
Upstream region at tRNA start position
tgattcatgt
tRNA gene sequence
CCCACCGTAGCTCAGCCCGGTTCAGAGCGCCCGGCTGTAGACCGGGTGGTCCGGGGTTCA
AGTCCCCGCGGTGGGActc
Downstream region at tRNA end position
tttaggtcat
Secondary structure (Cloverleaf model)
>At0163	Tyr	GTA
                   t      Actc tttaggtcat
                     C - G
                     C - G
                     C - G
                     A - T
                     C - G
                     C - G
                     G - C          T G
                    T     G C C C C     A
    C C G A        A      | | | | |     A
  C         C T C G       C G G G G     C
  G         | | | |                 T T
  G         G A G C
    T T C A        G     TGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       G *
                    G T A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
CCCACCGTAGCTCAGCCCGGTTCAGAGCGCCCGGCTGTAGataaagggcagttACCGGGT
GGTCCGGGGTTCAAGTCCCCGCGGTGGGA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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