The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0164
Genome IDCP000682
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera sedula DSM 5348 [CP000682]
Start position on genome 2154080
End posion on genome 2154188
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
atctaattat
tRNA gene sequence 
GCCGGGGTGCCCGAGCGGACCAAGGGGGTAGGCTCGAGACCTACTGTCTCTCCGAGACAC
GCGGGTTCAAATCCCGCCCCCGGCGcat
Downstream region at tRNA end position 
taaccgtgat
Secondary structure (Cloverleaf model)
>At0164	Ser	CGA
                   t      Gcat taaccgtgat
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
      C G A        G      | | | | |     A
    G       G C C C       G C G G G     C
    G         | | |                 T T
    A       A G G G
      C C A        G     TGTCTCTCCGAGACAC
                    G - C
                    T - A
                    A - T
                    G - C
                    G - C
                  C       A
                  T       G *
                    C G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTGCCCGAGCGGACCAAGGGGGTAGGCTCGAGacctttccagcgttaaagcgtg
cgACCTACTGTCTCTCCGAGACACGCGGGTTCAAATCCCGCCCCCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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