The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0165
Genome IDCP000682
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera sedula DSM 5348 [CP000682]
Start position on genome 2154234
End posion on genome 2154333
Amino Acid Leu
Anticodon CAG
Upstream region at tRNA start position 
agataaatgt
tRNA gene sequence 
GCGGGGGTGCCCGAGCTAGGTCAAAGGGGGTAGGCTCAGGCCCTACTGGAGTAGTCCTGC
GCGGGTTCAAATCCCGCCCCCCGCAtga
Downstream region at tRNA end position 
tatatacgat
Secondary structure (Cloverleaf model)
>At0165	Leu	CAG
                   t      Atga tatatacgat
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
    T C G A        G      | | | | |     A
  A         G C C C       G C G G G     C
  G           | | |                 T T
  G         A G G G
    T C A A        G     TGGAGTAGTCCTGC
                    G - C
                    T - A
                    A - T
                    G - C
                    G - C
                  C       C
                  T       G *
                    C A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTGCCCGAGCTAGGTCAAAGGGGGTAGGCTCAGGaccattaggtgagacCCCTA
CTGGAGTAGTCCTGCGCGGGTTCAAATCCCGCCCCCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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