The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0166
Genome IDCP000682
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera sedula DSM 5348 [CP000682]
Start position on genome 2180910
End posion on genome 2180984
Amino Acid Val
Anticodon TAC
Upstream region at tRNA start position 
cgtctacgtt
tRNA gene sequence 
GGGCCCGTCGTCTAGCCTGGTTAGGACGCTGGCCTTACAAGCCAGAGGTCTTGGGTTCAA
ATCCCAACGGGCCCActt
Downstream region at tRNA end position 
ttaagatcag
Secondary structure (Cloverleaf model)
>At0166	Val	TAC
                   t      Actt ttaagatcag
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     A A C C C     A
    C C G A        C      | | | | |     A
  T         T C T G       T T G G G     C
  G         + | | |                 T T
  G         G G A C
    T T A          G     AGGTC
                    C - G
                    T - A
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    T A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTCGTCTAGCCTGGTTAGGACGCTGGCCTTACAAGCCAGAGGTCTTGGGTTCAA
ATCCCAACGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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