The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0168
Genome IDCP000682
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera sedula DSM 5348 [CP000682]
Start position on genome 58865
End posion on genome 58769
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
gtttatttct
tRNA gene sequence 
GCGGGGGTGCCCGAGCCTGGTCAAAGGGGGCGGACTTAAGATCCGCTGGAGCAGTCCTGC
GCGGGTCCAAATCCCGCCCCCCGCActt
Downstream region at tRNA end position 
catcttggat
Secondary structure (Cloverleaf model)
>At0168	Leu	TAA
                   t      Actt catcttggat
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
    C C G A        G      | | | | |     A
  T         G C C C       G C G G G     C
  G           | | |                 T C
  G         A G G G
    T C A A        G     TGGAGCAGTCCTGC
                    G - C
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G *
                    T A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTGCCCGAGCCTGGTCAAAGGGGGCGGACTTAAGatcacataggtgATCCGCTG
GAGCAGTCCTGCGCGGGTCCAAATCCCGCCCCCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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