The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0169
Genome IDCP000682
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera sedula DSM 5348 [CP000682]
Start position on genome 99766
End posion on genome 99679
Amino Acid Phe
Anticodon GAA
Upstream region at tRNA start position 
gtagtttcgt
tRNA gene sequence 
GCCGCCGTAGCTCAGCCCGGGAGAGCACCCGGCTGAAGACCGGGTTGTCCGGGGTTCAAG
TCCCCGCGGCGGCAttt
Downstream region at tRNA end position 
cttgaatttt
Secondary structure (Cloverleaf model)
>At0169	Phe	GAA
                   t      Attt cttgaatttt
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T G
                    T     G C C C C     A
      C G A        A      | | | | |     A
    C       C T C G       C G G G G     C
    C       | | | |                 T T
    G       G A G C
      G G A        A     TTGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       G *
                    G A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCGTAGCTCAGCCCGGGAGAGCACCCGGCTGAAGacttcggtatagagACCGGGTT
GTCCGGGGTTCAAGTCCCCGCGGCGGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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