The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0170
Genome IDCP000682
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera sedula DSM 5348 [CP000682]
Start position on genome 100476
End posion on genome 100402
Amino Acid Gly
Anticodon CCC
Upstream region at tRNA start position 
tatttagagt
tRNA gene sequence 
GCGGCCGTAGTCCAGCCTGGTTAGGACGCTGGCCTCCCAAGCCAGAGATCCCGGGTTCAA
ATCCCGGCGGTCGCActa
Downstream region at tRNA end position 
aattcttttt
Secondary structure (Cloverleaf model)
>At0170	Gly	CCC
                   t      Acta aattcttttt
                     G - C
                     C - G
                     G - C
                     G + T
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  T         C C T G       C C G G G     C
  G         | | | |                 T T
  G         G G A C
    T T A          G     AGATC
                    C - G
                    T - A
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    C C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGCCGTAGTCCAGCCTGGTTAGGACGCTGGCCTCCCAAGCCAGAGATCCCGGGTTCAA
ATCCCGGCGGTCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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