The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0171
Genome IDCP000682
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera sedula DSM 5348 [CP000682]
Start position on genome 115550
End posion on genome 115476
Amino Acid His
Anticodon GTG
Upstream region at tRNA start position
gtctatcgtg
tRNA gene sequence
GCTCAGGTAGCTCAGCTCGGTTAGAGCGCTGGGCTGTGGACCCAGTGGTCCCGGGTTCAA
ATCCCGGCCTGAGCCctt
Downstream region at tRNA end position
gtttacgttt
Secondary structure (Cloverleaf model)
>At0171	His	GTG
                   g      Cctt gtttacgttt
                     G - C
                     C - G
                     T - A
                     C - G
                     A - T
                     G - C
                     G - C          T A
                    T     G G C C C     A
    T C G A        A      | | | | |     A
  C         C T C G       C C G G G     C
  G         | | | |                 T T
  G         G A G C
    T T A          G     TGGTC
                    C - G
                    T - A
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G
                    G T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTCAGGTAGCTCAGCTCGGTTAGAGCGCTGGGCTGTGGACCCAGTGGTCCCGGGTTCAA
ATCCCGGCCTGAGCC
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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