The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0174
Genome IDCP000682
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera sedula DSM 5348 [CP000682]
Start position on genome 166445
End posion on genome 166334
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
ctctaatacc
tRNA gene sequence 
GCCGGGGTGGCCGAGCGGTCTAAGGCGGCGGGCTGCAGACCCGTTATTTCGCGGGTTCAA
ATCCCGCCCCCGGCTctc
Downstream region at tRNA end position 
aagtttatat
Secondary structure (Cloverleaf model)
>At0174	Cys	GCA
                   c      Tctc aagtttatat
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
      C G A        G      | | | | |     A
    G       G C C G       G C G G G     C
    G         | | |                 T T
    T       A G G C
      C T A        G     TATTTC
                    G + T
                   *C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G
                    G C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTGGCCGAGCGGTCTAAGGCGGCactaccataggtagcgctagGGGCTGCAGtg
ggtttcaggttggaaACCCGTTATTTCGCGGGTTCAAATCCCGCCCCCGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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