The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0175
Genome IDCP000682
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera sedula DSM 5348 [CP000682]
Start position on genome 1545590
End posion on genome 1545515
Amino Acid Pro
Anticodon CGG
Upstream region at tRNA start position
cttgagacga
tRNA gene sequence
GGGCCCGTAGTCTAGCTTGGATTAGGATGCGACGTTCGGGTCGTCGTGATCCCGGGTTCA
AATCCCGGCGGGCCCAtcc
Downstream region at tRNA end position
gtctccgatc
Secondary structure (Cloverleaf model)
>At0175	Pro	CGG
                   a      Atcc gtctccgatc
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    T C G A        A      | | | | |     A
  T         T C T G       C C G G G     C
  G         + | | +                 T T
  G         G G A T
    A T T A        G     TGATC
                    C - G
                    G - C
                    A - T
                    C - G
                    G - C
                  T       T
                  T       G
                    C G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGTCTAGCTTGGATTAGGATGCGACGTTCGGGTCGTCGTGATCCCGGGTTCA
AATCCCGGCGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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