The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0176
Genome IDCP000682
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera sedula DSM 5348 [CP000682]
Start position on genome 1581275
End posion on genome 1581185
Amino Acid Arg
Anticodon CCT
Upstream region at tRNA start position 
ttagttgtag
tRNA gene sequence 
GGACCCGTAGCTCAGCCAGGATAGAGCGCCGGCCTCCTAAGCCGAGGGTCGGGGGTCCGA
ATCCCCCCGGGTCCGctt
Downstream region at tRNA end position 
ttcactttgt
Secondary structure (Cloverleaf model)
>At0176	Arg	CCT
                   g      Gctt ttcactttgt
                     G - C
                     G - C
                     A - T
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C C C C C     A
    C C G A        A      | | | | |     G
  A         C T C G       G G G G G     C
  G         | | | |                 T C
  G         G A G C
    A T A          G     GGGTC
                    C   A
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A *
                    C C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGACCCGTAGCTCAGCCAGGATAGAGCGCCGGCCTCCTAagcggaggcaagagtgAGCCG
AGGGTCGGGGGTCCGAATCCCCCCGGGTCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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