The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0177
Genome IDCP000682
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera sedula DSM 5348 [CP000682]
Start position on genome 1701534
End posion on genome 1701439
Amino Acid Leu
Anticodon CAA
Upstream region at tRNA start position 
gtataattgt
tRNA gene sequence 
GCGGGGATGCCCGAGCTGGTCCAAGGGGGCGGACTCAAGATCCGCTGGCGCAGGCCATCC
GGGGTTCAAATCCCCGTCCCCGCAtaa
Downstream region at tRNA end position 
cccgcgagaa
Secondary structure (Cloverleaf model)
>At0177	Leu	CAA
                   t      Ataa cccgcgagaa
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     A - T          T A
                    T     G C C C C     A
    T C G A        G      | | | | |     A
  G         G C C C       C G G G G     C
  G           | | |                 T T
  T         A G G G
    C C A          G     TGGCGCAGGCCATC
                    G - C
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G *
                    C A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGATGCCCGAGCTGGTCCAAGGGGGCGGACTCAAGaccgccagggtgATCCGCTGG
CGCAGGCCATCCGGGGTTCAAATCCCCGTCCCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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