The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0178
Genome IDCP000682
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera sedula DSM 5348 [CP000682]
Start position on genome 1724960
End posion on genome 1724864
Amino Acid Pro
Anticodon GGG
Upstream region at tRNA start position
cataagtaga
tRNA gene sequence
GGGGCCGTAGTCTAGCTTGGATTAGGATGCCAGCCTGGGGCGCTGGTGGTCCCGGGTTCA
AATCCCGGCGGCCCCAcct
Downstream region at tRNA end position
tcacaattct
Secondary structure (Cloverleaf model)
>At0178	Pro	GGG
                   a      Acct tcacaattct
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    T C G A        A      | | | | |     A
  T         T C T G       C C G G G     C
  G         + | | +                 T T
  G         G G A T
    A T T A        G     TGGTC
                    C - G
                    C - G
                    A - T
                    G - C
                    C - G
                  C       C
                  T       G *
                    G G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCCGTAGTCTAGCTTGGATTAGGATGCCAGCCTGGGGataactccctaaccaccaga
gCGCTGGTGGTCCCGGGTTCAAATCCCGGCGGCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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