The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0179
Genome IDCP000682
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera sedula DSM 5348 [CP000682]
Start position on genome 1735237
End posion on genome 1735150
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
aagcctcgag
tRNA gene sequence 
GGGCCCGTAGCTTAGCATGGTTAGAGCGCCCGGCTGATAACCGGGAGGTCGAGGGTTCAA
ATCCCTCCGGGCCCAcct
Downstream region at tRNA end position 
tcctgtgaaa
Secondary structure (Cloverleaf model)
>At0179	Ile	GAT
                   g      Acct tcctgtgaaa
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C T C C C     A
    A C G A        A      | | | | |     A
  T         T T C G       G A G G G     C
  G         + | | |                 T T
  G         G A G C
    T T A          G     AGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A *
                    G A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCTTAGCATGGTTAGAGCGCCCGGCTGATAacttctgtcagagACCGGGAG
GTCGAGGGTTCAAATCCCTCCGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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